PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr015228.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MYB
Protein Properties Length: 222aa    MW: 25185.2 Da    PI: 10.1611
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr015228.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding65.97.2e-212976148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l+++++ +G ++WktIa++ g++R++k+c++rw++yl
      Pbr015228.1 29 KGAWTAEEDQKLAEVIEIHGAKRWKTIASKAGLNRCGKSCRLRWLNYL 76
                     79********************************************97 PP

2Myb_DNA-binding52.98.4e-1782127148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ +++E++l+v+++k+lG++ W++Ia +++ gRt++++k++w+++l
      Pbr015228.1  82 RGNISEQEEDLIVRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 127
                      7899******************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.5742480IPR017930Myb domain
SuperFamilySSF466893.48E-3027123IPR009057Homeodomain-like
SMARTSM007173.0E-172878IPR001005SANT/Myb domain
PfamPF002493.4E-192976IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-253083IPR009057Homeodomain-like
CDDcd001675.12E-123176No hitNo description
SMARTSM007178.1E-1681129IPR001005SANT/Myb domain
PROSITE profilePS5129420.43881131IPR017930Myb domain
PfamPF002495.0E-1582127IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.5E-2584132IPR009057Homeodomain-like
CDDcd001673.27E-1086127No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MAPVTKDSIN RRKVKGGEAM KNTKREVNKG AWTAEEDQKL AEVIEIHGAK RWKTIASKAG  60
LNRCGKSCRL RWLNYLRPNI KRGNISEQEE DLIVRLHKLL GNRWSLIAGR LPGRTDNEIK  120
NYWNSHLSKR MNQKEKQNGA NLTRQMISID HQKDRVQIKE DSSTEEGATS TSTTSAASKG  180
GDQNSNINID VDDFFDFSNE GPLNLEWVSK FLGQDDGRWF N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-302613124128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009372337.11e-163PREDICTED: transcription factor MYB114-like
SwissprotQ9SEI07e-55WER_ARATH; Transcription factor WER
TrEMBLM5WVH01e-122M5WVH0_PRUPE; Uncharacterized protein
STRINGVIT_09s0002g01380.t018e-88(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21483288
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14750.12e-55myb domain protein 66